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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
3
ATAC-seq
3
ChIP-seq
1
FAIRE-seq
1
MPRA
1
snATAC-seq
Assay category
Transcription
5
DNA accessibility
3
DNA binding
Target of assay
3
transcription factor
1
RNA binding protein
Date released
84
February, 2021
3
February, 2023
3
November, 2017
1
May, 2022
1
October, 2019
1
October, 2022
Available data
1986
bam
1777
bed narrowPeak
1727
bigWig
1042
bigBed narrowPeak
987
fastq
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
101
zippedFastqFolder
89
txt
64
xls
56
tsv
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
92
Homo sapiens
Biosample type
85
tissue
4
cell line
3
in vitro differentiated cells
1
primary cell
Organ
84
bone element
3
liver
1
blood vessel
1
epithelium
1
musculature of body
1
vasculature
1
vein
Project
93
AMP
Genome assembly (visualization)
8
hg19
Lab
90
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
BIOSAMPLE
ASSAY
93 results
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RNA microarray
ATAC-seq
ChIP-seq
FAIRE-seq
MPRA
snATAC-seq
tissue
bone element
84
skeletal muscle tissue
1
cell line
HepG2
3
MIN6
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
primary cell
endothelial cell of umbilical vein
1
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