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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
3
ATAC-seq
1
FAIRE-seq
1
MPRA
1
snATAC-seq
Assay category
Transcription
5
DNA accessibility
Date released
84
February, 2021
3
February, 2023
November, 2017
1
May, 2022
1
October, 2019
1
October, 2022
Available data
1594
bam
1504
bed narrowPeak
1433
bigWig
730
bigBed narrowPeak
663
fastq
320
tagAlign
271
bed bed3+
252
bed broadPeak
221
bigBed broadPeak
101
zippedFastqFolder
89
txt
64
xls
56
tsv
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
89
Homo sapiens
Biosample type
85
tissue
3
in vitro differentiated cells
1
cell line
1
primary cell
Organ
84
bone element
1
blood vessel
1
epithelium
1
musculature of body
1
vasculature
1
vein
Project
90
AMP
Genome assembly (visualization)
5
hg19
Lab
87
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
month_released!
November, 2017
BIOSAMPLE
ASSAY
90 results
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RNA microarray
ATAC-seq
FAIRE-seq
MPRA
snATAC-seq
tissue
bone element
84
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
primary cell
endothelial cell of umbilical vein
1
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