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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
single cell RNA-seq
39
total RNA-seq
31
pCHi-C
12
ATAC-seq
6
WGBS
3
snDrop-seq
2
RNA microarray
Assay category
39
Transcription
12
DNA accessibility
Date released
25
February, 2020
16
February, 2023
10
August, 2021
Available data
110
fastq
99
bed narrowPeak
64
xls
59
txt
51
tsv
39
zippedFastqFolder
12
bigWig
9
bam
1
bed broadPeak
Organism
51
Homo sapiens
Biosample type
30
tissue
12
primary cell
9
cell line
Organ
12
brain
10
liver
5
eye
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
2
epithelium
2
musculature of body
2
pancreas
1
nerve
1
spinal cord
Project
51
AMP
Genome assembly (visualization)
hg19
1282
GRCh38
Lab
41
AMP-T2D consortium
10
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
51 results
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total RNA-seq
ATAC-seq
tissue
retina
3
pigmented layer of retina
2
Ammon's horn
1
C1 segment of cervical spinal cord
1
amygdala
1
+ See 22 more…
primary cell
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
cell line
HepG2
9
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