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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
106
ATAC-seq
97
total RNA-seq
6
WGBS
Assay category
114
DNA binding
106
DNA accessibility
97
Transcription
6
DNA methylation
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
Date released
165
May, 2021
67
August, 2021
45
May, 2020
38
May, 2022
6
February, 2021
2
February, 2023
Available data
256
bigWig
220
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
103
tsv
84
tagAlign
66
txt
64
xls
6
hic
4
bed bed3+
4
bedpe bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
Organism
323
Homo sapiens
Biosample type
216
primary cell
103
tissue
cell line
4
in vitro differentiated cells
Organ
64
kidney
25
pancreas
20
liver
6
epithelium
2
connective tissue
Project
180
T1D
137
AMP
6
HPAP
Genome assembly (visualization)
252
hg19
244
GRCh38
Lab
AMP-T2D consortium
228
Kyle Gaulton, UCSD
64
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
6
Klaus Kaestner, Upenn
4
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
biosample_type!
cell line
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
323 results
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ChIP-seq
ATAC-seq
total RNA-seq
WGBS
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
30
2
pancreatic alpha cell
6
B cell
2
T follicular helper cell
2
+ See 21 more…
tissue
kidney
64
liver
20
islet of Langerhans
18
1
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
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