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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
299
total RNA-seq
74
single cell RNA-seq
6
WGBS
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
Assay category
375
Transcription
6
DNA methylation
1
DNA accessibility
Date released
153
July, 2018
89
August, 2017
39
April, 2018
36
May, 2021
26
September, 2018
19
November, 2019
6
February, 2021
4
July, 2019
3
August, 2018
3
March, 2020
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
626
bam
567
bigWig
471
fastq
383
tsv
193
bed narrowPeak
84
bigBed narrowPeak
80
zippedFastqFolder
27
bed bed3+
20
bed broadPeak
19
tagAlign
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
bigBed broadPeak
6
hic
6
txt
3
cool
1
bedpe
Organism
383
Homo sapiens
Biosample type
275
tissue
108
primary cell
cell line
Organ
478
connective tissue
401
adipose tissue
383
pancreas
159
liver
121
epithelium
116
heart
58
bone element
26
brain
18
kidney
16
blood vessel
16
vasculature
9
musculature of body
7
limb
6
artery
6
embryo
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
377
AMP
6
HPAP
Genome assembly (visualization)
374
hg19
373
GRCh38
Lab
376
AMP-T2D consortium
6
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
biosample_type!
cell line
BIOSAMPLE
ASSAY
383 results
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total RNA-seq
single cell RNA-seq
WGBS
small RNA-seq
ATAC-seq
pCHi-C
tissue
islet of Langerhans
267
1
body of pancreas
3
2
pancreas
1
1
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
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