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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
total RNA-seq
5
pCHi-C
1
ATAC-seq
Assay category
9
Transcription
1
DNA accessibility
Date released
9
August, 2021
5
March, 2020
1
May, 2020
Available data
119
bam
106
fastq
68
bigWig
46
bed narrowPeak
32
bigBed narrowPeak
15
tsv
14
bed broadPeak
14
bigBed broadPeak
6
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3+
1
txt
1
vcf
Organism
15
Homo sapiens
Biosample type
159
tissue
18
primary cell
15
cell line
4
in vitro differentiated cells
4
stem cell
Organ
10
liver
2
kidney
1
epithelium
1
mammary gland
1
pancreas
Project
15
AMP
Genome assembly (visualization)
105
hg19
GRCh38
Lab
9
Bing Ren, UCSD
6
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
15 results
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total RNA-seq
pCHi-C
ATAC-seq
cell line
HepG2
9
1
EndoC_BH1
1
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
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