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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
total RNA-seq
58
ChIP-seq
5
pCHi-C
1
ATAC-seq
1
DNase-seq
Assay category
113
Transcription
58
DNA binding
2
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
78
February, 2021
58
November, 2017
17
August, 2021
9
March, 2020
5
January, 2019
5
October, 2019
4
May, 2021
1
May, 2020
1
November, 2019
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
178
Homo sapiens
Biosample type
1252
tissue
319
primary cell
178
cell line
132
in vitro differentiated cells
4
stem cell
Organ
73
liver
52
artery
52
blood vessel
52
heart
52
vasculature
35
epithelium
35
pancreas
8
embryo
6
kidney
1
mammary gland
Project
176
AMP
2
T1D
Genome assembly (visualization)
164
hg19
149
GRCh38
Lab
169
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
178 results
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total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
DNase-seq
cell line
HepG2
14
58
1
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
H1-hESC
8
RCC 7860 vector
1
1
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