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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
ChIP-seq
127
total RNA-seq
17
ATAC-seq
2
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
146
DNA binding
129
Transcription
18
DNA accessibility
Target of assay
79
histone
79
histone modification
41
narrow histone mark
37
broad histone mark
37
transcription factor
30
control
6
RNA binding protein
3
chromatin remodeller
Date released
85
May, 2021
54
August, 2017
43
December, 2017
39
February, 2018
37
August, 2021
22
February, 2021
5
November, 2019
4
March, 2020
4
October, 2019
2
December, 2019
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
295
Homo sapiens
Biosample type
2066
tissue
627
primary cell
597
cell line
295
in vitro differentiated cells
7
stem cell
Organ
59
connective tissue
28
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
295
AMP
Genome assembly (visualization)
265
GRCh38
264
hg19
Lab
295
AMP-T2D consortium
Audit category:
104
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
BIOSAMPLE
ASSAY
295 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
53
4
1
neural progenitor cell
20
7
10
pancreatic endoderm
18
4
cardiac precursors (cardiac muscle cell)
19
1
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