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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
total RNA-seq
100
single cell RNA-seq
27
DNase-seq
12
ATAC-seq
6
WGBS
4
Hi-C
3
ChIP-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
254
Transcription
40
DNA accessibility
6
DNA methylation
4
3D chromatin structure
3
DNA binding
Target of assay
3
control
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
54
May, 2021
48
July, 2018
45
May, 2020
43
April, 2018
26
September, 2018
24
June, 2019
22
July, 2019
12
February, 2023
8
February, 2021
5
December, 2019
5
November, 2020
5
October, 2019
3
August, 2018
3
August, 2021
3
June, 2018
2
October, 2018
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
308
Homo sapiens
Biosample type
1281
tissue
308
primary cell
156
in vitro differentiated cells
125
cell line
7
stem cell
Organ
138
epithelium
108
pancreas
23
connective tissue
16
kidney
11
brain
11
liver
11
vasculature
9
blood vessel
7
heart
3
musculature of body
3
vein
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
206
AMP
96
T1D
6
HPAP
Genome assembly (visualization)
283
hg19
282
GRCh38
Lab
204
AMP-T2D consortium
98
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
Audit category:
20
inconsistent ontology term
BIOSAMPLE
ASSAY
308 results
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total RNA-seq
single cell RNA-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
ChIP-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
53
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
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