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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
single cell RNA-seq
39
total RNA-seq
31
pCHi-C
12
ATAC-seq
6
WGBS
3
snDrop-seq
2
RNA microarray
Assay category
144
Transcription
12
DNA accessibility
6
DNA methylation
Date released
108
August, 2021
30
March, 2020
25
February, 2020
16
February, 2023
14
February, 2021
4
December, 2019
1
May, 2020
Available data
3392
bam
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
198
Homo sapiens
Biosample type
158
tissue
18
primary cell
14
cell line
4
in vitro differentiated cells
4
stem cell
Organ
98
heart
14
brain
12
kidney
12
liver
10
blood vessel
10
vasculature
9
epithelium
9
pancreas
5
eye
4
artery
4
connective tissue
3
adipose tissue
3
limb
3
musculature of body
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
192
AMP
6
HPAP
Lab
182
AMP-T2D consortium
10
Bing Ren, UCSD
6
Klaus Kaestner, Upenn
Audit category:
15
inconsistent ontology term
9
audit script error
files.file_type!
hdf5
bigWig
BIOSAMPLE
ASSAY
198 results
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single cell RNA-seq
total RNA-seq
pCHi-C
ATAC-seq
WGBS
snDrop-seq
RNA microarray
tissue
heart left ventricle
18
1
right cardiac atrium
18
1
heart right ventricle
17
1
left cardiac atrium
18
aorta
4
1
+ See 56 more…
primary cell
pancreatic alpha cell
6
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
cell line
HepG2
9
1
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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