Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
18
ATAC-seq
8
ChIP-seq
6
WGBS
5
single cell RNA-seq
3
snDrop-seq
1
pCHi-C
Assay category
550
Transcription
18
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
586
February, 2021
392
November, 2017
284
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
157
August, 2021
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
48
March, 2020
39
February, 2018
34
December, 2018
30
January, 2019
25
February, 2020
24
May, 2022
16
February, 2023
15
October, 2017
11
September, 2017
9
December, 2019
6
November, 2020
3
August, 2018
3
June, 2018
1
March, 2019
Available data
572
bam
559
tsv
551
bigWig
89
txt
45
fastq
23
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
586
Homo sapiens
Biosample type
460
tissue
95
cell line
22
in vitro differentiated cells
9
primary cell
Organ
451
connective tissue
386
adipose tissue
66
artery
66
blood vessel
66
bone element
66
heart
66
vasculature
32
epithelium
32
pancreas
8
kidney
8
skeleton
6
limb
1
liver
Project
580
AMP
6
HPAP
Genome assembly (visualization)
569
hg19
568
GRCh38
Lab
580
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
5
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
586 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
iPSC derived cell line
2
HepG2
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
primary cell
pancreatic alpha cell
6
osteoblast
1
1
1
See all biosamples
Download