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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
6
WGBS
Assay category
96
Transcription
6
DNA methylation
Date released
51
May, 2021
45
May, 2020
6
February, 2021
Available data
225
bigWig
180
bam
169
fastq
153
zippedFastqFolder
114
bed narrowPeak
102
tsv
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
2
bed bed3+
0
bed bedMethyl
Organism
102
Homo sapiens
Biosample type
102
primary cell
9
cell line
1
tissue
Organ
6
epithelium
6
pancreas
Project
96
T1D
6
HPAP
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
AMP-T2D consortium
96
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
102 results
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Clear Filters
total RNA-seq
WGBS
primary cell
monocyte
53
pancreatic alpha cell
6
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive B cel
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
regulatory T cell
2
immature natural killer cell
1
myeloid dendritic cell
1
natural killer cell
1
plasma cell
1
plasmacytoid dendritic cell
1
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