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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
total RNA-seq
5
pCHi-C
1
WGBS
Assay category
113
Transcription
DNA accessibility
1
DNA methylation
Date released
78
February, 2021
17
August, 2021
8
March, 2020
5
January, 2019
4
May, 2021
4
October, 2019
1
May, 2020
1
November, 2018
1
November, 2019
Available data
570
bam
517
bigWig
427
fastq
392
bed narrowPeak
353
bigBed narrowPeak
118
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
119
Homo sapiens
Biosample type
1100
tissue
268
primary cell
131
in vitro differentiated cells
119
cell line
4
stem cell
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
34
epithelium
33
pancreas
16
liver
8
embryo
6
kidney
1
mammary gland
Project
117
AMP
2
T1D
Genome assembly (visualization)
105
GRCh38
104
hg19
Lab
110
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
38
inconsistent ontology term
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
119 results
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total RNA-seq
pCHi-C
WGBS
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
1
1
H1-hESC
8
RCC 7860 vector
1
1
early embryonic cell
2
MCF-7
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
fibroblast cell line
1
glomerular visceral epithelial cell
1
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