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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
RRBS
6
WGBS
2
total RNA-seq
1
ATAC-seq
1
RNA microarray
Assay category
12
DNA methylation
2
Transcription
1
DNA accessibility
Date released
6
February, 2021
6
July, 2019
2
February, 2023
1
December, 2019
1
March, 2020
Available data
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
16
Homo sapiens
Biosample type
12
primary cell
3
tissue
1
cell line
Organ
100
heart
16
brain
16
epithelium
16
kidney
14
liver
13
pancreas
11
vasculature
10
blood vessel
6
eye
6
musculature of body
5
connective tissue
4
artery
3
adipose tissue
3
limb
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
10
AMP
6
HPAP
Genome assembly (visualization)
7
hg19
Lab
10
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
16 results
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Clear Filters
RRBS
WGBS
total RNA-seq
ATAC-seq
RNA microarray
primary cell
pancreatic alpha cell
6
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 2 more…
tissue
pigmented layer of retina
2
renal glomerulus
1
cell line
EndoC_BH1
1
See all biosamples
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