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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
total RNA-seq
70
single cell RNA-seq
9
RRBS
7
WGBS
2
small RNA-seq
1
ATAC-seq
1
RNA microarray
1
pCHi-C
Assay category
156
Transcription
16
DNA methylation
1
DNA accessibility
Date released
33
April, 2018
33
July, 2018
32
February, 2021
26
September, 2018
17
July, 2019
6
December, 2019
6
March, 2020
6
May, 2021
3
August, 2018
3
October, 2019
2
August, 2017
2
February, 2020
2
February, 2023
2
October, 2018
1
June, 2018
1
November, 2019
Available data
374
bam
369
bigWig
259
fastq
211
bed narrowPeak
165
tsv
123
bigBed narrowPeak
80
zippedFastqFolder
68
bed broadPeak
55
bed bed3+
55
bigBed broadPeak
22
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
8
hic
7
bedpe bed3+
3
cool
2
hdf5
1
tar
1
txt
Organism
175
Homo sapiens
Biosample type
125
primary cell
35
cell line
13
tissue
2
in vitro differentiated cells
Organ
481
connective tissue
423
pancreas
403
adipose tissue
177
liver
176
heart
162
epithelium
70
vasculature
69
blood vessel
58
artery
58
bone element
28
brain
28
kidney
14
embryo
13
musculature of body
8
limb
6
eye
5
nerve
3
spleen
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
167
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
162
hg19
153
GRCh38
Lab
169
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
37
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
175 results
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total RNA-seq
single cell RNA-seq
RRBS
WGBS
small RNA-seq
ATAC-seq
RNA microarray
pCHi-C
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 15 more…
cell line
EndoC_BH1
33
1
glomerular visceral epithelial cell
1
tissue
skeletal muscle tissue
1
2
1
psoas muscle
2
1
pigmented layer of retina
2
gastrocnemius medialis
1
left ventricle myocardium
1
+ See 2 more…
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
See all biosamples
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