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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
332
total RNA-seq
74
single cell RNA-seq
10
WGBS
2
ATAC-seq
2
RRBS
2
pCHi-C
2
small RNA-seq
Assay category
408
Transcription
12
DNA methylation
2
DNA accessibility
Date released
153
July, 2018
89
August, 2017
40
May, 2021
39
April, 2018
32
February, 2021
26
September, 2018
20
November, 2019
7
March, 2020
6
July, 2019
4
November, 2018
3
August, 2018
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
689
bam
623
bigWig
471
fastq
418
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
424
Homo sapiens
Biosample type
282
tissue
108
primary cell
34
cell line
Organ
481
connective tissue
423
pancreas
403
adipose tissue
177
liver
176
heart
162
epithelium
70
vasculature
69
blood vessel
58
artery
58
bone element
28
brain
28
kidney
14
embryo
13
musculature of body
8
limb
6
eye
5
nerve
3
spleen
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
416
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
410
GRCh38
410
hg19
Lab
417
AMP-T2D consortium
6
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
40
inconsistent ontology term
BIOSAMPLE
ASSAY
424 results
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total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
RRBS
pCHi-C
small RNA-seq
tissue
islet of Langerhans
267
1
1
body of pancreas
3
2
2
pancreas
1
2
1
1
bladder (urinary bladder)
1
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
1
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