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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
total RNA-seq
6
WGBS
2
ATAC-seq
Assay category
106
Transcription
6
DNA methylation
2
DNA accessibility
Date released
51
May, 2021
45
May, 2020
10
August, 2021
6
February, 2021
1
March, 2019
1
October, 2017
Available data
310
bigWig
274
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
bedpe
1
vcf
Organism
114
Homo sapiens
Biosample type
102
primary cell
9
cell line
3
tissue
Organ
9
liver
9
pancreas
6
epithelium
Project
96
T1D
12
AMP
6
HPAP
Genome assembly (visualization)
97
GRCh38
97
hg19
Lab
AMP-T2D consortium
96
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
6
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
files.file_type!
bedpe
BIOSAMPLE
ASSAY
114 results
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total RNA-seq
WGBS
ATAC-seq
primary cell
monocyte
53
pancreatic alpha cell
6
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
+ See 21 more…
cell line
HepG2
9
tissue
islet of Langerhans
1
2
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