Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
total RNA-seq
84
ChIP-seq
20
ATAC-seq
6
WGBS
Assay category
112
Transcription
84
DNA binding
20
DNA accessibility
6
DNA methylation
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
135
May, 2021
45
May, 2020
24
May, 2022
10
August, 2021
6
February, 2021
1
March, 2019
1
October, 2017
Available data
310
bigWig
274
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
222
Homo sapiens
Biosample type
186
primary cell
27
tissue
9
cell line
Organ
33
pancreas
9
liver
6
epithelium
Project
180
T1D
36
AMP
6
HPAP
Genome assembly (visualization)
199
hg19
181
GRCh38
Lab
AMP-T2D consortium
204
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
6
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
222 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
primary cell
monocyte
53
84
pancreatic alpha cell
6
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
+ See 21 more…
tissue
islet of Langerhans
7
20
cell line
HepG2
9
See all biosamples
Download