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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
13
ChIP-seq
6
total RNA-seq
2
small RNA-seq
1
pCHi-C
Assay category
33
DNA accessibility
13
DNA binding
8
Transcription
Target of assay
13
histone
13
histone modification
8
broad histone mark
5
narrow histone mark
Date released
33
June, 2019
13
August, 2017
4
July, 2019
3
March, 2020
2
February, 2020
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
55
Homo sapiens
Biosample type
52
tissue
3
primary cell
Organ
488
connective tissue
436
pancreas
404
adipose tissue
237
liver
198
heart
176
epithelium
102
kidney
85
vasculature
81
blood vessel
73
brain
62
artery
58
bone element
55
musculature of body
43
limb
18
ureter
14
embryo
9
eye
7
nerve
4
vein
2
intestine
2
spleen
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
55
AMP
Genome assembly (visualization)
52
hg19
39
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
October, 2018
BIOSAMPLE
ASSAY
55 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
pCHi-C
tissue
muscle of arm
17
skeletal muscle tissue
13
1
1
muscle of leg
13
psoas muscle
2
1
forelimb muscle
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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