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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
total RNA-seq
70
single cell RNA-seq
16
DNase-seq
6
ChIP-seq
6
WGBS
1
ATAC-seq
1
RNA microarray
Assay category
148
Transcription
17
DNA accessibility
6
DNA binding
6
DNA methylation
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
33
April, 2018
33
July, 2018
32
February, 2021
26
September, 2018
14
June, 2019
7
October, 2019
6
December, 2019
6
May, 2021
5
July, 2019
4
November, 2017
3
August, 2018
3
March, 2020
2
February, 2023
2
October, 2018
1
June, 2018
1
November, 2019
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
178
Homo sapiens
Biosample type
138
primary cell
35
cell line
3
tissue
2
in vitro differentiated cells
Organ
488
connective tissue
438
pancreas
404
adipose tissue
237
liver
198
heart
178
epithelium
102
kidney
85
vasculature
81
blood vessel
73
brain
62
artery
58
bone element
55
musculature of body
43
limb
18
ureter
14
embryo
9
eye
7
nerve
4
vein
2
intestine
2
spleen
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
170
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
166
GRCh38
163
hg19
Lab
172
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
37
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
178 results
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total RNA-seq
single cell RNA-seq
DNase-seq
ChIP-seq
WGBS
ATAC-seq
RNA microarray
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 17 more…
cell line
EndoC_BH1
33
1
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
2
renal glomerulus
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
See all biosamples
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