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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
392
ChIP-seq
113
total RNA-seq
11
ATAC-seq
5
pCHi-C
2
DNase-seq
Assay category
392
DNA binding
113
Transcription
13
DNA accessibility
Target of assay
352
transcription factor
88
recombinant protein
63
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
narrow histone mark
17
broad histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
92
February, 2021
56
November, 2018
31
August, 2021
27
December, 2018
20
January, 2019
19
October, 2019
13
November, 2019
10
March, 2020
5
May, 2021
1
May, 2020
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
523
Homo sapiens
Biosample type
2020
tissue
565
primary cell
523
cell line
263
in vitro differentiated cells
6
stem cell
Organ
323
liver
64
artery
64
blood vessel
64
heart
64
vasculature
55
pancreas
54
blood
54
bodily fluid
50
epithelium
14
kidney
8
embryo
1
mammary gland
Project
519
AMP
4
T1D
Genome assembly (visualization)
505
hg19
462
GRCh38
Lab
500
AMP-T2D consortium
23
Bing Ren, UCSD
Audit category:
60
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
523 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNase-seq
cell line
HepG2
307
14
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
EndoC_BH1
13
33
2
H1-hESC
8
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