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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
total RNA-seq
9
single cell RNA-seq
8
pCHi-C
7
ATAC-seq
5
Hi-C
Assay category
137
Transcription
7
DNA accessibility
5
3D chromatin structure
Date released
69
May, 2021
44
February, 2021
15
March, 2020
7
October, 2019
6
February, 2023
6
July, 2018
4
May, 2020
2
December, 2019
2
November, 2019
1
February, 2020
1
June, 2018
Available data
212
bam
192
bigWig
150
tsv
85
txt
63
bed narrowPeak
24
bigBed narrowPeak
11
fastq
7
bedpe bed3+
6
bed bed3+
5
hic
4
bed broadPeak
4
bigBed broadPeak
3
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
ibed
1
bed bedgraph
Organism
157
Homo sapiens
Biosample type
96
in vitro differentiated cells
40
cell line
17
primary cell
3
tissue
1
stem cell
Organ
40
pancreas
37
epithelium
5
kidney
2
embryo
1
brain
1
connective tissue
1
stomach
1
urinary bladder
Project
151
AMP
6
T1D
Genome assembly (visualization)
142
hg19
134
GRCh38
Lab
153
AMP-T2D consortium
4
Kyle Gaulton, UCSD
Audit category:
157
inconsistent ontology term
12
audit script error
BIOSAMPLE
ASSAY
157 results
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total RNA-seq
single cell RNA-seq
pCHi-C
ATAC-seq
Hi-C
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
cardiomyocytes (cardiac muscle cell)
3
2
2
2
lymphocyte of B lineage (iPSC)
1
1
1
intermediate cardiomyocytes
1
+ See 4 more…
cell line
EndoC_BH1
33
1
1
RCC 7860 vector
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
primary cell
gabaergic neuron
3
microglial cell/astrocyte
3
central memory CD8-positive, alpha-beta T cell
2
co-expressing pancreatic endocrine cell
2
naive B cel
2
+ See 3 more…
tissue
bladder (urinary bladder)
1
cerebellum (Hemisphere)
1
gastric (mucosa of stomach)
1
stem cell
mesenchymal stem cell
1
See all biosamples
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