Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
total RNA-seq
3
small RNA-seq
2
Hi-C
2
pCHi-C
Assay category
172
Transcription
2
3D chromatin structure
Date released
144
May, 2020
10
August, 2021
7
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
1
February, 2020
1
October, 2019
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
176
Homo sapiens
Biosample type
155
tissue
16
cell line
5
primary cell
Organ
479
connective tissue
424
pancreas
402
adipose tissue
176
liver
171
heart
161
epithelium
70
blood vessel
70
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
11
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
176
AMP
Genome assembly (visualization)
164
hg19
162
GRCh38
Lab
166
AMP-T2D consortium
10
Bing Ren, UCSD
BIOSAMPLE
ASSAY
176 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
small RNA-seq
Hi-C
pCHi-C
tissue
liver
147
1
1
1
right lobe of liver
3
2
cell line
HepG2
14
1
1
primary cell
hepatocyte
5
Download