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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
25
ChIP-seq
4
DNase-seq
2
ATAC-seq
2
single cell RNA-seq
Assay category
58
Transcription
25
DNA binding
6
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
56
February, 2021
21
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
102
bam
85
bigWig
74
bed narrowPeak
58
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
89
Homo sapiens
Biosample type
56
cell line
31
tissue
2
primary cell
Organ
634
liver
632
pancreas
574
connective tissue
428
adipose tissue
310
epithelium
282
heart
236
brain
165
vasculature
160
blood vessel
143
kidney
94
limb
89
artery
71
musculature of body
58
bone element
55
blood
55
bodily fluid
32
nerve
29
embryo
18
ureter
17
spleen
15
vein
11
eye
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
85
GRCh38
85
hg19
Lab
89
AMP-T2D consortium
BIOSAMPLE
ASSAY
89 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
4
tissue
tibial artery
1
18
2
1
coronary artery
1
3
2
1
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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