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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
6
WGBS
3
Hi-C
Assay category
98
Transcription
6
DNA methylation
3
3D chromatin structure
Date released
51
May, 2021
45
May, 2020
6
February, 2021
3
October, 2022
2
March, 2020
Available data
196
bigWig
186
bam
169
fastq
153
zippedFastqFolder
104
tsv
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
107
Homo sapiens
Biosample type
105
primary cell
2
cell line
Organ
11
epithelium
11
pancreas
Project
AMP
98
T1D
9
HPAP
Genome assembly (visualization)
101
hg19
98
GRCh38
Lab
96
Kyle Gaulton, UCSD
9
Klaus Kaestner, Upenn
2
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
3
audit script error
award.project!
AMP
BIOSAMPLE
ASSAY
107 results
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total RNA-seq
WGBS
Hi-C
primary cell
monocyte
53
pancreatic alpha cell
6
1
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
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cell line
EndoC_BH1
2
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