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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
37
ChIP-seq
3
WGBS
3
small RNA-seq
2
ATAC-seq
2
pCHi-C
1
DNase-seq
Assay category
400
Transcription
37
DNA binding
3
DNA accessibility
3
DNA methylation
Target of assay
19
control
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
23
October, 2018
18
August, 2017
12
July, 2019
2
February, 2020
1
August, 2018
1
March, 2020
1
November, 2018
1
October, 2017
Available data
442
bam
425
bigWig
401
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
445
Homo sapiens
Biosample type
442
tissue
2
primary cell
1
in vitro differentiated cells
Organ
688
pancreas
634
liver
576
connective tissue
445
adipose tissue
313
epithelium
168
heart
74
vasculature
71
blood vessel
60
blood
60
bodily fluid
58
artery
58
bone element
47
brain
37
embryo
25
spleen
24
kidney
11
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
445
AMP
Genome assembly (visualization)
421
GRCh38
419
hg19
Lab
445
AMP-T2D consortium
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
445 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
ATAC-seq
pCHi-C
DNase-seq
tissue
adipose tissue
381
2
3
1
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
1
1
white adipose tissue
12
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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