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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
single cell RNA-seq
39
total RNA-seq
31
pCHi-C
22
Hi-C
14
ATAC-seq
6
WGBS
3
snDrop-seq
2
RNA microarray
Assay category
144
Transcription
22
3D chromatin structure
14
DNA accessibility
6
DNA methylation
Date released
110
August, 2021
42
March, 2020
25
February, 2020
16
February, 2023
14
February, 2021
4
December, 2019
4
October, 2019
3
October, 2022
2
November, 2019
1
March, 2019
1
May, 2020
Available data
433
bam
407
fastq
239
bigWig
200
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
222
Homo sapiens
Biosample type
170
tissue
23
primary cell
17
cell line
8
in vitro differentiated cells
4
stem cell
Organ
101
heart
18
pancreas
16
epithelium
14
brain
14
liver
13
blood vessel
13
kidney
13
vasculature
5
eye
5
musculature of body
4
artery
4
connective tissue
3
adipose tissue
3
limb
2
intestine
2
vein
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
213
AMP
9
HPAP
Genome assembly (visualization)
1424
hg19
GRCh38
Lab
200
AMP-T2D consortium
12
Bing Ren, UCSD
9
Klaus Kaestner, Upenn
1
Katalin Susztak, Upenn
Audit category:
21
inconsistent ontology term
13
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
222 results
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single cell RNA-seq
total RNA-seq
pCHi-C
Hi-C
ATAC-seq
WGBS
snDrop-seq
RNA microarray
tissue
heart left ventricle
18
1
1
heart right ventricle
17
1
1
right cardiac atrium
18
1
left cardiac atrium
18
aorta
4
1
1
+ See 57 more…
primary cell
pancreatic alpha cell
1
6
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
+ See 3 more…
cell line
HepG2
9
1
1
EndoC_BH1
1
1
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
2
cardiac precursors (cardiac muscle cell)
1
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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