Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
332
total RNA-seq
74
single cell RNA-seq
59
ChIP-seq
24
ATAC-seq
8
DNase-seq
7
Hi-C
6
WGBS
2
FAIRE-seq
2
small RNA-seq
1
pCHi-C
Assay category
408
Transcription
59
DNA binding
34
DNA accessibility
7
3D chromatin structure
6
DNA methylation
Target of assay
49
histone
49
histone modification
30
broad histone mark
19
narrow histone mark
10
transcription factor
6
RNA binding protein
Date released
153
July, 2018
106
August, 2017
42
October, 2018
40
May, 2021
40
September, 2018
39
April, 2018
32
February, 2021
22
November, 2019
7
March, 2020
7
October, 2019
5
September, 2017
4
July, 2019
4
June, 2019
3
August, 2018
3
November, 2018
3
October, 2022
1
August, 2021
1
February, 2020
1
June, 2018
1
March, 2019
1
May, 2019
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
509
Homo sapiens
Biosample type
340
tissue
133
primary cell
42
cell line
Organ
534
liver
515
pancreas
506
connective tissue
411
adipose tissue
265
heart
238
epithelium
154
vasculature
153
brain
150
blood vessel
129
kidney
91
limb
83
artery
58
bone element
58
musculature of body
54
blood
54
bodily fluid
31
nerve
18
ureter
15
vein
14
embryo
14
spleen
11
eye
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
504
AMP
9
HPAP
2
T1D
Genome assembly (visualization)
504
hg19
495
GRCh38
Lab
504
AMP-T2D consortium
9
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
40
inconsistent ontology term
3
audit script error
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
515 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
FAIRE-seq
small RNA-seq
pCHi-C
tissue
islet of Langerhans
267
1
1
2
1
body of pancreas
3
26
4
2
pancreas
1
13
2
1
1
1
endocrine pancreas
14
primary cell
pancreatic alpha cell
10
12
6
1
6
pancreatic beta cell
10
12
7
1
pancreatic acinar cell
4
12
5
1
pancreatic ductal cell
4
10
4
pancreatic delta cell
11
+ See 4 more…
cell line
EndoC_BH1
33
1
1
Panc1
6
1
See all biosamples
Download