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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
931
total RNA-seq
103
single cell RNA-seq
19
pCHi-C
16
small RNA-seq
11
Hi-C
3
snDrop-seq
2
RNA microarray
1
ATAC-seq
Assay category
1050
Transcription
11
3D chromatin structure
1
DNA accessibility
Date released
452
February, 2021
143
May, 2020
116
July, 2018
100
August, 2021
89
August, 2017
47
July, 2019
38
May, 2021
34
March, 2020
25
February, 2020
20
November, 2019
9
October, 2019
6
April, 2018
4
February, 2023
2
December, 2019
1
March, 2019
Available data
1907
bam
1772
bigWig
1075
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1086
Homo sapiens
Biosample type
1086
tissue
276
primary cell
135
in vitro differentiated cells
121
cell line
4
stem cell
Organ
457
connective tissue
399
adipose tissue
278
pancreas
155
liver
114
heart
58
bone element
23
brain
15
blood vessel
15
vasculature
13
kidney
9
musculature of body
7
limb
5
eye
5
nerve
4
artery
3
epithelium
2
intestine
1
adrenal gland
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
1086
AMP
Genome assembly (visualization)
929
hg19
917
GRCh38
Lab
1083
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
7
audit script error
3
inconsistent ontology term
organ_slims!
esophagus
BIOSAMPLE
ASSAY
1086 results
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total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
Hi-C
snDrop-seq
RNA microarray
ATAC-seq
tissue
adipose tissue
381
1
islet of Langerhans
267
2
1
liver
147
1
1
1
bone tissue
58
heart left ventricle
3
18
1
1
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