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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
single cell RNA-seq
72
total RNA-seq
3
Hi-C
3
pCHi-C
1
small RNA-seq
Assay category
165
Transcription
3
3D chromatin structure
Date released
92
August, 2021
52
February, 2021
11
July, 2019
7
March, 2020
3
February, 2020
3
May, 2021
3
October, 2019
Available data
224
bigWig
211
bam
191
bed narrowPeak
168
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
171
Homo sapiens
Biosample type
114
tissue
52
cell line
4
primary cell
1
in vitro differentiated cells
Organ
478
connective tissue
424
pancreas
401
adipose tissue
176
liver
171
heart
162
epithelium
71
blood vessel
71
vasculature
58
artery
58
bone element
26
brain
25
kidney
14
embryo
11
musculature of body
7
limb
5
eye
5
nerve
2
intestine
2
vein
1
adrenal gland
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
171
AMP
Genome assembly (visualization)
73
hg19
70
GRCh38
Lab
171
AMP-T2D consortium
organ_slims!
esophagus
BIOSAMPLE
ASSAY
171 results
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single cell RNA-seq
total RNA-seq
Hi-C
pCHi-C
small RNA-seq
tissue
heart left ventricle
18
3
1
1
heart right ventricle
17
1
1
1
right cardiac atrium
18
1
left cardiac atrium
18
heart
4
1
1
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cell line
smooth muscle cell of the coronary artery
52
primary cell
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
in vitro differentiated cells
cardiac fibroblast
1
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