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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
total RNA-seq
6
single cell RNA-seq
3
Hi-C
1
pCHi-C
Assay category
67
Transcription
3
3D chromatin structure
Date released
52
February, 2021
6
August, 2021
5
July, 2019
4
March, 2020
3
February, 2020
1
October, 2019
Available data
180
bam
150
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
68
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
71
Homo sapiens
Biosample type
52
cell line
15
tissue
4
primary cell
Organ
478
connective tissue
424
pancreas
401
adipose tissue
176
liver
171
heart
162
epithelium
71
blood vessel
71
vasculature
58
artery
58
bone element
26
brain
25
kidney
14
embryo
11
musculature of body
7
limb
5
eye
5
nerve
2
intestine
2
vein
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
71
AMP
Genome assembly (visualization)
61
hg19
58
GRCh38
Lab
71
AMP-T2D consortium
Audit category:
1
audit script error
BIOSAMPLE
ASSAY
71 results
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total RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
tissue
aorta
1
4
1
1
ascending aorta
2
pulmonary artery
2
thoracic aorta
2
coronary artery
1
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primary cell
endothelial cell of umbilical vein
2
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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