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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
total RNA-seq
40
ChIP-seq
2
pCHi-C
2
single cell RNA-seq
Assay category
114
Transcription
40
DNA binding
Target of assay
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
10
control
4
transcription factor
Date released
85
May, 2021
27
August, 2021
22
February, 2021
February, 2018
14
August, 2017
4
March, 2020
2
December, 2019
2
October, 2019
Available data
252
bam
228
bigWig
116
bed narrowPeak
116
tsv
102
fastq
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
156
Homo sapiens
Biosample type
1314
tissue
370
primary cell
156
in vitro differentiated cells
139
cell line
4
stem cell
Organ
19
connective tissue
5
epithelium
3
pancreas
2
embryo
1
heart
Project
156
AMP
Genome assembly (visualization)
130
GRCh38
129
hg19
Lab
156
AMP-T2D consortium
Audit category:
93
inconsistent ontology term
2
audit script error
month_released!
February, 2018
BIOSAMPLE
ASSAY
156 results
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total RNA-seq
ChIP-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
20
cardiac precursors (cardiac muscle cell)
19
adipocyte
4
14
induced pluripotent stem cell
9
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