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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
total RNA-seq
84
ChIP-seq
6
WGBS
Assay category
106
Transcription
84
DNA binding
6
DNA methylation
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
135
May, 2021
45
May, 2020
10
August, 2021
6
February, 2021
Available data
310
bigWig
274
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
196
Homo sapiens
Biosample type
186
primary cell
9
cell line
1
tissue
Organ
9
liver
7
pancreas
6
epithelium
Project
180
T1D
10
AMP
6
HPAP
Genome assembly (visualization)
180
GRCh38
180
hg19
Lab
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
6
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
196 results
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total RNA-seq
ChIP-seq
WGBS
primary cell
monocyte
53
84
pancreatic alpha cell
6
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
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cell line
HepG2
9
tissue
islet of Langerhans
1
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