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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
single cell RNA-seq
54
total RNA-seq
12
ATAC-seq
2
small RNA-seq
Assay category
156
Transcription
12
DNA accessibility
Target of assay
3
control
Date released
48
July, 2018
43
April, 2018
26
September, 2018
18
July, 2019
12
February, 2023
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
1
February, 2021
1
May, 2021
Available data
429
bam
388
bigWig
240
fastq
181
bed narrowPeak
168
tsv
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
168
Homo sapiens
Biosample type
1075
tissue
168
primary cell
131
in vitro differentiated cells
110
cell line
4
stem cell
Organ
110
epithelium
102
pancreas
15
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
168
AMP
Genome assembly (visualization)
156
GRCh38
156
hg19
Lab
168
AMP-T2D consortium
96
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
Audit category:
13
inconsistent ontology term
BIOSAMPLE
ASSAY
168 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
small RNA-seq
primary cell
pancreatic alpha cell
12
10
pancreatic beta cell
12
10
pancreatic acinar cell
12
4
pancreatic ductal cell
10
4
pancreatic delta cell
11
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