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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
5
pCHi-C
4
Hi-C
2
single cell RNA-seq
Assay category
129
Transcription
4
3D chromatin structure
Date released
79
May, 2021
22
February, 2021
15
February, 2018
8
March, 2020
7
August, 2021
4
October, 2019
2
December, 2019
1
August, 2018
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
138
Homo sapiens
Biosample type
970
tissue
226
primary cell
138
in vitro differentiated cells
121
cell line
4
stem cell
Organ
6
connective tissue
6
embryo
2
epithelium
1
adipose tissue
1
heart
Project
138
AMP
Genome assembly (visualization)
133
hg19
127
GRCh38
Lab
138
AMP-T2D consortium
Audit category:
96
inconsistent ontology term
2
audit script error
month_released!
July, 2018
BIOSAMPLE
ASSAY
138 results
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total RNA-seq
pCHi-C
Hi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
cardiomyocytes (cardiac muscle cell)
3
2
2
2
induced pluripotent stem cell
9
neural progenitor cell
7
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