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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
total RNA-seq
3
single cell RNA-seq
Assay category
24
Transcription
Date released
559
February, 2021
189
May, 2020
173
May, 2021
164
July, 2018
123
August, 2021
89
August, 2017
65
July, 2019
49
April, 2018
45
March, 2020
26
September, 2018
25
February, 2020
20
November, 2019
16
February, 2023
16
October, 2019
15
February, 2018
9
December, 2019
5
January, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
Available data
283
bam
236
bigWig
210
bed narrowPeak
91
bigBed narrowPeak
49
tagAlign
34
fastq
24
tsv
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
4
bedpe bed3+
4
hic
1
hdf5
1
tagAlign bed3+
1
tar
Organism
24
Homo sapiens
Biosample type
9
cell line
8
tissue
5
primary cell
2
in vitro differentiated cells
Organ
6
epithelium
6
kidney
6
liver
4
limb
4
nerve
3
pancreas
2
heart
1
brain
Project
24
AMP
Genome assembly (visualization)
24
GRCh38
24
hg19
Lab
24
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
BIOSAMPLE
ASSAY
24 results
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total RNA-seq
single cell RNA-seq
cell line
HepG2
5
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
glomerular visceral epithelial cell
1
tissue
tibial nerve
4
heart
2
brain
1
liver
1
primary cell
pancreatic alpha cell
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
pancreatic acinar cell
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
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