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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
29
total RNA-seq
24
ChIP-seq
22
ATAC-seq
Assay category
127
Transcription
24
DNA binding
22
DNA accessibility
Target of assay
16
histone
16
histone modification
9
narrow histone mark
8
control
7
broad histone mark
Date released
586
February, 2021
392
November, 2017
284
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
157
August, 2021
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
48
March, 2020
39
February, 2018
34
December, 2018
30
January, 2019
25
February, 2020
24
May, 2022
16
February, 2023
15
October, 2017
11
September, 2017
9
December, 2019
6
November, 2020
3
August, 2018
3
June, 2018
1
March, 2019
Available data
171
bed narrowPeak
139
tsv
76
fastq
64
txt
64
xls
50
bigWig
49
bam
24
tagAlign
10
bed bed3
9
bed bed3+
3
bed bedgraph
2
bedpe bed3+
2
hic
1
vcf
Organism
173
Homo sapiens
Biosample type
103
tissue
37
in vitro differentiated cells
17
cell line
16
primary cell
Organ
92
heart
13
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
4
eye
2
artery
1
pancreas
Project
173
AMP
Genome assembly (visualization)
41
GRCh38
40
hg19
Lab
163
AMP-T2D consortium
10
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
BIOSAMPLE
ASSAY
173 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
7
20
10
cell line
HepG2
9
H1-hESC
8
primary cell
hepatocyte
4
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
See all biosamples
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