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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
29
total RNA-seq
12
ATAC-seq
2
Hi-C
Assay category
127
Transcription
12
DNA accessibility
2
3D chromatin structure
Date released
559
February, 2021
189
May, 2020
173
May, 2021
164
July, 2018
125
August, 2021
89
August, 2017
65
July, 2019
57
March, 2020
49
April, 2018
26
September, 2018
25
February, 2020
22
November, 2019
19
October, 2019
16
February, 2023
15
February, 2018
9
December, 2019
5
January, 2019
4
August, 2018
4
November, 2020
3
June, 2018
3
October, 2022
2
October, 2018
Available data
171
bed narrowPeak
139
tsv
76
fastq
64
txt
64
xls
50
bigWig
49
bam
24
tagAlign
10
bed bed3
9
bed bed3+
3
bed bedgraph
2
bedpe bed3+
2
hic
1
vcf
Organism
141
Homo sapiens
Biosample type
104
tissue
18
cell line
12
primary cell
7
in vitro differentiated cells
Organ
92
heart
10
liver
8
embryo
6
blood vessel
6
vasculature
4
eye
2
artery
2
epithelium
2
pancreas
Project
141
AMP
Genome assembly (visualization)
16
hg19
15
GRCh38
Lab
129
AMP-T2D consortium
12
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
BIOSAMPLE
ASSAY
141 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
Hi-C
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
+ See 11 more…
cell line
HepG2
9
1
H1-hESC
8
primary cell
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
in vitro differentiated cells
neural progenitor cell
7
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