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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
38
total RNA-seq
30
pCHi-C
2
ATAC-seq
Assay category
136
Transcription
2
DNA accessibility
Date released
559
February, 2021
189
May, 2020
173
May, 2021
164
July, 2018
123
August, 2021
89
August, 2017
65
July, 2019
49
April, 2018
45
March, 2020
26
September, 2018
25
February, 2020
20
November, 2019
16
February, 2023
16
October, 2019
15
February, 2018
9
December, 2019
5
January, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
Available data
168
tsv
109
bed narrowPeak
67
bigWig
65
bam
64
xls
57
txt
24
tagAlign
14
bedpe bed3+
12
hic
5
bed bed3+
2
ibed
1
vcf
Organism
168
Homo sapiens
Biosample type
127
tissue
26
cell line
11
in vitro differentiated cells
4
stem cell
Organ
97
heart
11
liver
8
blood vessel
8
embryo
8
vasculature
7
pancreas
3
epithelium
3
musculature of body
2
artery
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
166
AMP
2
T1D
Genome assembly (visualization)
30
hg19
28
GRCh38
Lab
158
AMP-T2D consortium
10
Bing Ren, UCSD
Audit category:
11
inconsistent ontology term
BIOSAMPLE
ASSAY
168 results
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Clear Filters
single cell RNA-seq
total RNA-seq
pCHi-C
ATAC-seq
tissue
heart left ventricle
18
1
1
heart right ventricle
17
1
1
right cardiac atrium
18
1
left cardiac atrium
18
aorta
4
1
1
+ See 25 more…
cell line
HepG2
9
H1-hESC
8
EndoC_BH1
2
1
early embryonic cell
2
MCF-7
1
+ See 3 more…
in vitro differentiated cells
neural progenitor cell
7
cardiomyocytes (cardiac muscle cell)
1
1
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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