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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
561
total RNA-seq
6
WGBS
5
single cell RNA-seq
3
snDrop-seq
Assay category
566
Transcription
6
DNA methylation
Date released
559
February, 2021
189
May, 2020
173
May, 2021
164
July, 2018
123
August, 2021
89
August, 2017
65
July, 2019
49
April, 2018
45
March, 2020
26
September, 2018
25
February, 2020
20
November, 2019
16
February, 2023
16
October, 2019
15
February, 2018
9
December, 2019
5
January, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
Available data
822
bam
758
bigWig
575
tsv
212
bed narrowPeak
89
txt
70
bigBed narrowPeak
57
tagAlign
45
fastq
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
6
csv
4
bed bedgraph
4
hic
3
bedpe bed3+
2
bed bed3
1
hdf5
1
tagAlign bed3+
1
tar
Organism
575
Homo sapiens
Biosample type
460
tissue
82
cell line
24
in vitro differentiated cells
9
primary cell
Organ
449
connective tissue
386
adipose tissue
58
bone element
54
heart
52
artery
52
blood vessel
52
vasculature
35
epithelium
32
pancreas
14
kidney
4
limb
4
nerve
1
brain
1
liver
Project
569
AMP
6
HPAP
Genome assembly (visualization)
561
GRCh38
561
hg19
Lab
569
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
49
inconsistent ontology term
5
audit script error
BIOSAMPLE
ASSAY
575 results
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Clear Filters
total RNA-seq
WGBS
single cell RNA-seq
snDrop-seq
tissue
adipose tissue
381
bone tissue
58
kidney
5
tibial nerve
4
visceral abdominal adipose tissue
3
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
26
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
19
adipocyte
4
cardiomyocytes (cardiac muscle cell)
1
primary cell
pancreatic alpha cell
6
kidney glomerular epithelial cell
1
kidney tubule cell
1
osteoblast
1
See all biosamples
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