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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
Assay category
189
Transcription
Date released
559
February, 2021
189
May, 2020
173
May, 2021
164
July, 2018
123
August, 2021
89
August, 2017
65
July, 2019
49
April, 2018
45
March, 2020
26
September, 2018
25
February, 2020
20
November, 2019
16
February, 2023
16
October, 2019
15
February, 2018
9
December, 2019
5
January, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
Available data
527
bam
510
bigWig
322
bed narrowPeak
189
tsv
139
tagAlign
70
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
4
hic
3
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
189
Homo sapiens
Biosample type
81
in vitro differentiated cells
54
primary cell
46
tissue
8
cell line
Organ
40
pancreas
9
epithelium
6
kidney
5
heart
4
limb
4
nerve
2
embryo
1
brain
1
connective tissue
1
liver
Project
138
AMP
51
T1D
Genome assembly (visualization)
189
GRCh38
189
hg19
Lab
138
AMP-T2D consortium
51
Kyle Gaulton, UCSD
Audit category:
74
inconsistent ontology term
BIOSAMPLE
ASSAY
189 results
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total RNA-seq
in vitro differentiated cells
cardiomyocytes
59
induced pluripotent stem cell
9
cardiomyocytes (cardiac muscle cell)
2
cardiac fibroblast
1
cardiac precursors (cardiac muscle cell)
1
+ See 9 more…
primary cell
monocyte
51
embryonic stem cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
tissue
islet of Langerhans
36
tibial nerve
4
heart
2
brain
1
cardiac atrium
1
+ See 2 more…
cell line
EndoC_BH1
4
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
glomerular visceral epithelial cell
1
See all biosamples
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