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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
total RNA-seq
3
single cell RNA-seq
Assay category
19
Transcription
Date released
559
February, 2021
189
May, 2020
173
May, 2021
164
July, 2018
123
August, 2021
89
August, 2017
65
July, 2019
49
April, 2018
45
March, 2020
26
September, 2018
25
February, 2020
20
November, 2019
16
February, 2023
16
October, 2019
15
February, 2018
9
December, 2019
5
January, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
Available data
253
bam
210
bigWig
189
bed narrowPeak
70
bigBed narrowPeak
49
tagAlign
19
tsv
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
4
bedpe bed3+
4
fastq
4
hic
1
hdf5
1
tagAlign bed3+
1
tar
Organism
19
Homo sapiens
Biosample type
8
tissue
5
primary cell
4
cell line
2
in vitro differentiated cells
Organ
6
epithelium
6
kidney
4
limb
4
nerve
3
pancreas
2
heart
1
brain
1
liver
Project
19
AMP
Genome assembly (visualization)
19
GRCh38
19
hg19
Lab
19
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
BIOSAMPLE
ASSAY
19 results
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total RNA-seq
single cell RNA-seq
tissue
tibial nerve
4
heart
2
brain
1
liver
1
primary cell
pancreatic alpha cell
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
pancreatic acinar cell
1
cell line
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
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