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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
total RNA-seq
3
pCHi-C
1
ATAC-seq
Assay category
109
Transcription
1
DNA accessibility
Date released
78
February, 2021
17
August, 2021
7
March, 2020
5
January, 2019
4
May, 2021
1
May, 2020
1
November, 2019
Available data
567
bam
510
bigWig
427
fastq
396
bed narrowPeak
354
bigBed narrowPeak
113
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
113
Homo sapiens
Biosample type
1064
tissue
264
primary cell
131
in vitro differentiated cells
113
cell line
4
stem cell
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
35
epithelium
34
pancreas
15
liver
8
embryo
kidney
1
mammary gland
Project
111
AMP
2
T1D
Genome assembly (visualization)
101
hg19
100
GRCh38
Lab
104
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
34
inconsistent ontology term
organ_slims!
kidney
BIOSAMPLE
ASSAY
113 results
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total RNA-seq
pCHi-C
ATAC-seq
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
HepG2
14
1
H1-hESC
8
early embryonic cell
2
MCF-7
1
fibroblast cell line
1
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