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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
326
total RNA-seq
80
single cell RNA-seq
7
Hi-C
6
WGBS
2
ATAC-seq
2
small RNA-seq
1
pCHi-C
Assay category
408
Transcription
7
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Date released
153
July, 2018
89
August, 2017
40
May, 2021
39
April, 2018
32
February, 2021
26
September, 2018
22
November, 2019
7
March, 2020
4
July, 2019
3
August, 2018
3
October, 2022
2
August, 2021
2
October, 2018
1
February, 2020
1
June, 2018
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
424
Homo sapiens
Biosample type
278
tissue
111
primary cell
35
cell line
Organ
479
connective tissue
424
pancreas
402
adipose tissue
176
liver
171
heart
161
epithelium
70
blood vessel
70
vasculature
58
artery
58
bone element
26
brain
24
kidney
embryo
11
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
413
AMP
9
HPAP
2
T1D
Genome assembly (visualization)
414
hg19
406
GRCh38
Lab
413
AMP-T2D consortium
9
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
40
inconsistent ontology term
3
audit script error
organ_slims!
embryo
BIOSAMPLE
ASSAY
424 results
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total RNA-seq
single cell RNA-seq
Hi-C
WGBS
ATAC-seq
small RNA-seq
pCHi-C
tissue
islet of Langerhans
261
6
2
1
body of pancreas
3
2
pancreas
1
1
1
primary cell
pancreatic alpha cell
10
12
1
6
pancreatic beta cell
10
12
1
pancreatic acinar cell
4
12
1
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
1
1
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