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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
single cell RNA-seq
69
total RNA-seq
6
WGBS
1
ATAC-seq
Assay category
139
Transcription
6
DNA methylation
1
DNA accessibility
Date released
33
April, 2018
33
July, 2018
32
February, 2021
26
September, 2018
6
May, 2021
5
December, 2019
3
August, 2018
3
March, 2020
2
October, 2018
1
July, 2019
1
June, 2018
1
November, 2019
Available data
284
bam
271
bigWig
257
fastq
146
tsv
116
bed narrowPeak
80
zippedFastqFolder
59
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
11
bed bed3+
7
tagAlign
6
hic
5
bedpe bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
cool
2
hdf5
1
tar
Organism
146
Homo sapiens
Biosample type
110
primary cell
34
cell line
2
in vitro differentiated cells
tissue
Organ
153
epithelium
142
pancreas
57
heart
54
artery
54
blood vessel
54
vasculature
21
connective tissue
20
liver
14
embryo
kidney
3
brain
2
adipose tissue
2
musculature of body
1
mammary gland
1
pericardium
Project
138
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
140
hg19
139
GRCh38
Lab
140
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
36
inconsistent ontology term
organ_slims!
kidney
biosample_type!
tissue
BIOSAMPLE
ASSAY
146 results
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single cell RNA-seq
total RNA-seq
WGBS
ATAC-seq
primary cell
pancreatic alpha cell
12
10
6
pancreatic beta cell
12
10
pancreatic acinar cell
12
4
pancreatic ductal cell
10
4
pancreatic delta cell
11
+ See 5 more…
cell line
EndoC_BH1
33
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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