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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
21
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
21
DNA binding
4
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
52
February, 2021
20
October, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
Available data
102
bam
85
bigWig
74
bed narrowPeak
58
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
83
Homo sapiens
Biosample type
52
cell line
29
tissue
2
primary cell
Organ
532
liver
508
pancreas
506
connective tissue
411
adipose tissue
262
heart
232
epithelium
153
brain
151
vasculature
147
blood vessel
128
kidney
91
limb
83
artery
58
bone element
56
musculature of body
54
blood
54
bodily fluid
31
nerve
18
ureter
14
embryo
14
spleen
13
vein
11
eye
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
83
AMP
Genome assembly (visualization)
79
GRCh38
79
hg19
Lab
83
AMP-T2D consortium
BIOSAMPLE
ASSAY
83 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
tissue
tibial artery
1
18
2
coronary artery
1
3
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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