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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
70
single cell RNA-seq
6
WGBS
1
ATAC-seq
1
RNA microarray
Assay category
206
Transcription
6
DNA methylation
1
DNA accessibility
Date released
90
February, 2021
33
April, 2018
33
July, 2018
26
September, 2018
6
December, 2019
6
May, 2021
5
July, 2019
3
August, 2018
3
March, 2020
3
October, 2019
2
February, 2023
2
October, 2018
1
June, 2018
1
November, 2019
Available data
383
bam
359
bigWig
257
fastq
214
tsv
159
bed narrowPeak
88
txt
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
4
bed bed3
3
cool
2
hdf5
1
tar
Organism
214
Homo sapiens
Biosample type
116
primary cell
61
tissue
35
cell line
2
in vitro differentiated cells
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
206
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
205
hg19
204
GRCh38
Lab
208
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
36
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
214 results
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total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
RNA microarray
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 11 more…
tissue
bone tissue
58
pigmented layer of retina
2
renal glomerulus
1
cell line
EndoC_BH1
33
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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