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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
390
total RNA-seq
74
single cell RNA-seq
6
WGBS
2
ATAC-seq
2
small RNA-seq
1
pCHi-C
Assay category
466
Transcription
6
DNA methylation
2
DNA accessibility
Date released
153
July, 2018
90
February, 2021
89
August, 2017
40
May, 2021
39
April, 2018
26
September, 2018
20
November, 2019
6
March, 2020
4
July, 2019
3
August, 2018
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
755
bam
681
bigWig
475
tsv
471
fastq
222
bed narrowPeak
94
txt
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
4
bed bed3
3
cool
1
bedpe
1
hdf5
Organism
475
Homo sapiens
Biosample type
333
tissue
108
primary cell
34
cell line
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
467
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
466
hg19
464
GRCh38
Lab
468
AMP-T2D consortium
6
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
BIOSAMPLE
ASSAY
475 results
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total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
small RNA-seq
pCHi-C
tissue
islet of Langerhans
267
1
bone tissue
58
body of pancreas
3
2
pancreas
1
1
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
1
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