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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
pCHi-C
Assay category
24
Transcription
Target of assay
3
control
Date released
12
February, 2020
11
July, 2019
1
October, 2019
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
24
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
24
Homo sapiens
Biosample type
21
tissue
3
primary cell
Organ
476
connective tissue
416
pancreas
400
adipose tissue
172
liver
165
heart
156
epithelium
67
blood vessel
67
vasculature
58
artery
58
bone element
24
brain
22
kidney
14
embryo
8
musculature of body
7
limb
5
eye
5
nerve
1
pericardium
1
spinal cord
Project
24
AMP
Genome assembly (visualization)
12
GRCh38
12
hg19
Lab
24
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
spleen
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
24 results
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total RNA-seq
small RNA-seq
single cell RNA-seq
tissue
frontal cortex
2
1
cerebellum
2
cerebellum (Hemisphere)
1
1
diencephalon
1
1
temporal lobe
1
1
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primary cell
cerebellar granule cell
2
Purkinje cell
1
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