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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
pCHi-C
Assay category
29
Transcription
Target of assay
3
control
Date released
13
February, 2020
11
July, 2019
4
February, 2023
2
March, 2020
1
October, 2019
Available data
250
bam
236
bed narrowPeak
228
bigWig
133
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
39
bed bed3+
31
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
31
Homo sapiens
Biosample type
28
tissue
3
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
31
AMP
Genome assembly (visualization)
12
GRCh38
12
hg19
Lab
31
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
31 results
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total RNA-seq
small RNA-seq
single cell RNA-seq
pCHi-C
tissue
frontal cortex
2
1
retina
3
Ammon's horn
1
1
cerebellum
2
cerebellum (Hemisphere)
1
1
+ See 13 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
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